Scaffold Ga0208250_1000536

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000536
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10830
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F030989	Metagenome / Metatranscriptome	183	Y
F034813	Metagenome	173	Y
F085161	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_100053616	F085161	GAG	MEIYIVKSFGPENGWVNLKAFDNNDAAVSFANNVEKQIPDDVEDEFVEIECFTVRSW
Ga0208250_100053617	F006060	N/A	MLVVFAGILYNGTLLIIKSFQSKTQKRGFMLKFTGVAKVGDIIRAYDFKPMAGRDDAFIEGVVIDADNMEGGYKAFKIEVTADKFKKYETKPKKTNRVGALMYVPHETGFMEFDFRVVNLSKV
Ga0208250_100053623	F034813	AGGA	MSYDADYEKVYMVEFESGRTIHVQFFDVEEVKEYCADNHAGDVIKSIYKEVYNSWEDEEE
Ga0208250_100053633	F030989	N/A	MKYIAKPSLFNNKGLKEFSDAREAVLYLNKVLSDNEVNPELDYVFIAPKASPKQLKHAIEEYVGIGKLVCVA