Scaffold Ga0208871_1000367

Overview

Basic Information

• Taxon OID: 3300025381
• Scaffold ID: Ga0208871_1000367
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14354
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051683	Metagenome	143	Y
F055446	Metagenome	138	Y
F079520	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208871_10003671	F079520	N/A	SKKGTREMKLTTEEIHNIYLHQSGVAEGLLRAGADADFPVMFAEAIIEFYELRKAQDK
Ga0208871_100036713	F055446	GAG	MAIKNKKYNYYKLNVGFFPDIVKLCFDNTVFQQILKDHDVTLKANALDCGIAETHLIGDGKDAIIILVFDMSLVNDNLGELVDTIAHEVSHAVDHLAEHIGEEDNFVNETRAYLSGHLAGQIFKICLHEKEKHARKASGKLLKQKSKRVKGPELQVDQLSVGGTGSSSFPSGAGVSSGAKDFDWQDISKADDSFFPTK
Ga0208871_100036718	F051683	AGGAG	MKLELDNDFTDEIIRSGLAESYVSVSSMMKNGDAWHEDDIASWEVLLPAIKIVGGWYSVNFDADIKKAKKRMK