NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208871_1000272

Scaffold Ga0208871_1000272


Overview

Basic Information
Taxon OID3300025381 Open in IMG/M
Scaffold IDGa0208871_1000272 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18282
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (70.59%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042147Metagenome / Metatranscriptome158Y
F071905Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208871_100027211F042147AGGAMLANGTIKTIEDEEDIYISLTSLCEYFVQSSVNMRQEIKHSNPADKRYASGLYDMMHTIAQEIVELGKFEAQRRMINGPEDLLRMIDKHNGGSVE
Ga0208871_100027223F071905AGGAGGMAKGYTPWENRDWVYKRYVVEKKTVLQMAMEARCSHMTIQRALEKFDLIKKPRKWSK

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