Scaffold Ga0208738_1000716

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000716
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8296
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009462	Metagenome / Metatranscriptome	317	Y
F024559	Metagenome / Metatranscriptome	205	Y
F033308	Metagenome	177	Y
F063276	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100071610	F063276	AGGA	MQNSTVRQNLDGILVLILASCAIAFAIWWNLEHPHLVVRYDCSIAEISPDYPPAVKEGCRKLRAENILQKPK
Ga0208738_100071613	F024559	GGAGG	MTSALIKLIFGLFLIAVAVIFGPLLGIWSLNTLFPVLAIPYTLETWAAFGLLFGSATGLSFGSKK
Ga0208738_100071615	F009462	AGGAG	MELHESVRDTFKTMVIKEHEGFRLTLNKHEVLAPKGLFSIDMVQESLKDGDVIDSQTYSFFMDKEELQALAYGLTA
Ga0208738_10007166	F033308	AGGA	MTNAKQVFDELFYRMKTTDLNKFEIKREVGPNWLPNGTIPFDLTAKNGIATFEVWAESIQDAEDQVSQFLERDNDGQD