NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208738_1000222

Scaffold Ga0208738_1000222


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000222 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17372
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (55.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F024484Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0208738_100022216F004256N/AMKYYYNNVPGQGLCRNNLIYTSLISEDKKLFCKWYHNDTEYHKGKNQVVDPDKMEEKWIREVNYITQMRNAYPDLVPTITNIDLKSRKLFFEIDGPDFWEQAGCDQANYDLVVPDWQEQMIEIIKTHKRMGWHKYSMHPSSYFVVGGRLRSINYFFTYRDTEPNISIKDVESHIYTTRQDEMRKHLDALGIKWDEPQPWAVMDQLCWESFRTNYPDEFIERVKCLL
Ga0208738_100022227F024484N/AMLTPTNYTIDTKLFQEACLQLPQSGMKTTINQPTGNFFYDPWILKEEYKGTVWETLYNSLPESKGEARIIILDPAQCYQSHADIDDRYHLNILGEECFLIDLVHKKMHKLEQNGIWYSMDTSCIHSAANFGRSARVQLVIRHLLKTNKLIIPIPITITTTLGSLDHARFVFDNTISPWLNSANKHEFINDFSYTPERVKFNIEYNKIDSLKQMLPKEFKIV
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