Scaffold Ga0208738_1000063

Overview

Basic Information

• Taxon OID: 3300025379
• Scaffold ID: Ga0208738_1000063
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33126
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (76.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F017107	Metagenome	242	Y
F027764	Metagenome	193	Y
F029048	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208738_100006315	F027764	N/A	MNIQVEIVKENDDGSADALVHFDKEGLAMLVQEGIISILRQYIEQEKKKAKKK
Ga0208738_100006321	F029048	AGGAG	MLNHIRDVIGDKAIISTQPFGVDEERQLIAFETQDLKAVIEDVIQVCADCCLDATSRKAILNLLD
Ga0208738_100006324	F007166	GGA	MDELAQVMFEMEERLEVALNNMEYGTDLSADDVDVIRAACGKPNNKRNVLLQSVFDDFGNVFGGSNATV
Ga0208738_100006330	F017107	N/A	MTPDYSENYLQIAKLLKQYHNATLRKNYEKATKIAHELADETIKLEFSTYEQVRKNWVN