Scaffold Ga0207957_1000108

Overview

Basic Information

• Taxon OID: 3300025372
• Scaffold ID: Ga0207957_1000108
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19663
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (76.32%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009720	Metagenome / Metatranscriptome	314	Y
F014940	Metagenome / Metatranscriptome	258	Y
F022104	Metagenome	216	N
F034036	Metagenome	175	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207957_100010816	F022104	GGAG	MTSTDLTTIAYNAVFTIGATGTGIWYVFKHGVQNVLRQEFDDIQTIKHEVTPNSGGSLNDAIRKQVIPMVETLVEKQQDIALEVATINGKFEQHIREHNA
Ga0207957_100010817	F009720	GGA	MLKRKYIHRDTGDVLTFSEQVSWTIQSVIRNWFFVIGWTAVTIFWWIKPSWFGDDKSYVHWMNLASWLAVTVELIIGIAMIGQTKRDAMIIRHILKLEKQEIEHLQDLLENDERL
Ga0207957_100010834	F034036	GGA	LTTIAAIQGPDWVVLGADSQSSGDDGFSINIPDGKVFKNNDIVFAAAGAVRGINLLQHDFTPPAVNTKDIDKYMTRMLIPAMRRTFNEAGYEINKAEDAVVNDNIWIVVVKGQVYRIEEDYGWERTTDNLYVAGSGERFALGAMSALAGGVLVDDIAKAKKIITKAIQIASKYDTATGGKITINVIQENK
Ga0207957_10001086	F014940	AGG	MASGDGLSTVYHLNRLAGTIVNSVPQLDFNGAAVQWYYNVAGKKASRGIDALNQIYAVRHGGKNLFLDTPGILNALAGTVGLGEAEAAARITS