Basic Information | |
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Taxon OID | 3300025367 Open in IMG/M |
Scaffold ID | Ga0208108_1000135 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE22May08 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13121 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (86.36%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Crystal Bog, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 46.0072 | Long. (o) | -89.6063 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F027396 | Metagenome | 194 | Y |
F036528 | Metagenome / Metatranscriptome | 169 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208108_10001351 | F036528 | N/A | RKAFDAACELCDNKVYRRDVGYGVAVLREEVYEEVDGKKKLTGYRDVTSTYEVEENGKTVLKKKPYVGIISQGMRNFWNQIAVISEKYGSLNEREIEIMRQGAGTDTTYMAFALDKKEIENISTRYSKFVPDIEAFLNRIGSQEYYDAQLRGVKPEAKDDFSTPTTSKVVEDEYEDEEYVDIEEATTADRLKAKLNG |
Ga0208108_100013518 | F027396 | AGG | MENEEKPQRKSRKQEVIKGKMTWQILERLLNNYYEWKEAYRVSGNPDLQLLNGVTVNIHDVLKGIADLPPRQKQAVILSCLENRKEVEVAKIMGFTKWSSPVGMYKRRALKNLCDTIWSEDVD |
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