Scaffold Ga0208412_1014364

Overview

Basic Information

• Taxon OID: 3300025361
• Scaffold ID: Ga0208412_1014364
• Source Dataset Name: Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF4 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1272
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Deep Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.5627
  • Long. (^o): 78.1882
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007732	Metagenome	346	Y
F086358	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208412_10143641	F007732	GGA	MSDEIIVSSTEALYDDYDNLKSQTPLGYAPFGLAGIVVNDCDIICGNCATDEELADNDNGAIFGNSEWDYPAPVCEDCQKPLNVDLLVYKSYDPELHFRLRMTEELGGFADTNCLTIEEIGEKAAERAAKIGRDYAPTDMFESDEHYEIPTDSAQYSNNIAPQLRQLAGY
Ga0208412_10143643	F086358	N/A	DHPSHYAREIALKQIATEEYEVDNYDSRLRLWDELISFTRYTVKVEYKITEPDGTCHERSHQGLYWHQSQTKLHNQQIGTLRRTNNAEVDSNPDKRGENRLDVLDMTITPELRYTNLEPLIDTEWFVYNL