NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208322_1025285

Scaffold Ga0208322_1025285


Overview

Basic Information
Taxon OID3300025359 Open in IMG/M
Scaffold IDGa0208322_1025285 Open in IMG/M
Source Dataset NamePeatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)572
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m).1 to .2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023164Metagenome / Metatranscriptome211Y
F071035Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208322_10252851F071035GGAGMVRIALLLLVCGVSAVARAAPPIDIETAATLYQDAAIREQVRASLGSMPAHIRQLFSADTAAQLSDQQLNAVTAAAKRGFRIDVFEAP
Ga0208322_10252852F023164GAGGMGWRRVLTLALSVSFMAGCAAPDPPPPKKTVFDPLTQQLGRARDVQNTVDANTDSTRKAVDSQERGDNTP

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