Scaffold Ga0208383_1013853

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1013853
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 994
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033290	Metagenome	177	Y
F050052	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_10138532	F033290	GGAGG	MTNAEIIEMAKKCGWDNPATNMMPLYEFAKLVAEKEREACAEICDGFYLSWIDIQGRYEFMGEGASECAGAIRARGQE
Ga0208383_10138533	F050052	GGA	MIYKTFKQWVKSRFLEIGEPRKKAYSKDELALIEMGWGYGYDAGVMVEREQCAQIADLWSVSYSHPSKTIAEQIRKRGQE