Scaffold Ga0208383_1001176

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1001176
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4278
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003439	Metagenome / Metatranscriptome	486	Y
F019636	Metagenome / Metatranscriptome	228	Y
F070899	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_10011766	F003439	AGGA	MTVNNSRSQNASLDEGATDGKYRKRRPNTTVIPGLGDQEVVKNRAGLHPYMNYGFINSEEASKLNPGK
Ga0208383_10011767	F070899	GGAG	MKNDPGLLTDSTGEGMAGAEDVRLGTQRDLSQTYYNGSKPCIQCGLTLNPVQSLHSDMCPNCNRRKAAHLVKGMMA
Ga0208383_10011768	F019636	AGG	MSGRMADGVYSRKPWQAPPEAAYPPQQYVGPFASNQERLLSQSMAVNMMTGKEIQELVRPPLPQVRLFPDRYGYTESELTLEDIIAMPRANQQRVESDYSQTPNTQESTSTNSLGGSI