NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208383_1001176

Scaffold Ga0208383_1001176


Overview

Basic Information
Taxon OID3300025357 Open in IMG/M
Scaffold IDGa0208383_1001176 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4278
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003439Metagenome / Metatranscriptome486Y
F019636Metagenome / Metatranscriptome228Y
F070899Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208383_10011766F003439AGGAMTVNNSRSQNASLDEGATDGKYRKRRPNTTVIPGLGDQEVVKNRAGLHPYMNYGFINSEEASKLNPGK
Ga0208383_10011767F070899GGAGMKNDPGLLTDSTGEGMAGAEDVRLGTQRDLSQTYYNGSKPCIQCGLTLNPVQSLHSDMCPNCNRRKAAHLVKGMMA
Ga0208383_10011768F019636AGGMSGRMADGVYSRKPWQAPPEAAYPPQQYVGPFASNQERLLSQSMAVNMMTGKEIQELVRPPLPQVRLFPDRYGYTESELTLEDIIAMPRANQQRVESDYSQTPNTQESTSTNSLGGSI

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