Scaffold Ga0208383_1000107

Overview

Basic Information

• Taxon OID: 3300025357
• Scaffold ID: Ga0208383_1000107
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE10Sep07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16270
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058734	Metagenome / Metatranscriptome	134	Y
F063402	Metagenome / Metatranscriptome	129	Y
F079412	Metagenome	115	N
F091108	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208383_100010711	F079412	N/A	MINWDTLSLVYSAILDPVYKAKKKRNFVIRIRGVKHGTWNWYSYNSDGAYFVIALKLRIGQFHRVIIHEFRHFIQDKILHVPMTADYEKMYYRHPLEVDARYFENKGLHFARRLYNRIEKQKKTFAILNEYRPKGEKTNRNGNTSRSKLRSKGKGSK
Ga0208383_10001075	F063402	GGAG	MNTISENVIVKDINTRTLGDESVETRMNAVTRRFNPTKYHVLGFLNRSSQVILQPRFYNVRDSKGRWAKIRQSR
Ga0208383_10001077	F058734	N/A	MQITIIGNINEFTASEQKTLYSDGADMTTGMYYLVADAKDFVTQGREVIPNLPALRSLTASANISWIITNYRGNRVAFGSASA
Ga0208383_10001078	F091108	AGG	MNKAFLRRQAASKWKDLQCGIWERWDYRCCYLVIRQLDNGKFKPMIGAMGDLSMPGADLPPAGYHQLNTLEEAKNFLHKYVAYIREVWDKQVLDGRK