Scaffold Ga0208255_100014

Overview

Basic Information

• Taxon OID: 3300025353
• Scaffold ID: Ga0208255_100014
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32923
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (86.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002260	Metagenome / Metatranscriptome	577	Y
F011761	Metagenome / Metatranscriptome	287	Y
F023848	Metagenome	208	Y
F026558	Metagenome	197	Y
F028717	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208255_1000142	F026558	GGA	MKVSDLTKKSTTYSAIIQQMMNYQYAYLGGYIFKQQVRKKRPSEDSVLWNDLITNTVAQPICRYVVDTINDILFETGVKRDIRFATPQGTIINPDNSEWADLFTMDIDLQNRDIDSFMEQVGDLTSIFGHCWIAVDMPQTAQGNLGRPYTCAISPIDVWDWEWEYYGGKPILKYVKVKEMEDVDYFYLKCYYLGDANTPSHWASYKLPKMSLSGQLDNEAECIGAGQFPAGMSIPLFIAFGRKDPRVIDLGVSDIDAASDAMREHYKLECEAYTALQFAHTIIRAEKGIAIPVHAGAIVRALKDQVEAIKIDTGDVEQIIKKQNDILSNLEGLVGMGGQRQDKQQVASGISIIEERKQVHRVAKSKARLMEVTEGMIFTYAARFMGQRWAGSICYNTDYEAHDTNYRMALLQQASTLAGDSEMVKALITKELISMLAPTEDTAEYEAVYVNSIPDQAVRNLLLDEANEAVTADNLYSMIPEPNPEMTKEEIAAIEQTRINAEQEEGVGEFGSADNASILGGPGTPTTPMGTSYYPSQAIAVQITGLNTGR
Ga0208255_1000144	F023848	AGGAG	MTGKIDIPLFGEQKTILKDWLTTDKHCIDVVPVGSGKTFLAAIALPIFASDAKFHKGKDIIYSAPTGAMIKSLIWEPLKQSCVKHFGLVDGKDINNSELTIKFPNGVFIRCKSAEQRENLRGLNVGVWVADEAALYTRDTLQEITNRLRPKVGQPDTQGRLIVISTPNGAGPLHDLFNLARDNPEKYVVRHYNYMEMRSGNRNFIEEQKRIISPLKFAQDYMCQWESVADMFYYAWDKTKYTKKIEDRGGPLYSFHDFNKRVMCAVVAQVRGEHTRDGTIEVLRTYAIPDCSTEGIAQAIRDDFPRRRIDSIIDMSGTQLNRDTTSAFGITDRVILERYGFTIVNSRRSNPLVSDTDNTSNAFIARGGLWVDPDDKFLLDALGTYHFEDASRKKLVKYTEQRYAHIDGLGDSIRYGIHHLFPITHETPYNLPEYLGMDPKYQQLTQPGLRYMPPSPVYPGGPTWEQIMMGEDEAEDYQKW
Ga0208255_10001440	F002260	AGGAG	MSVPYQRISNATVQDIKFYDPAAYRRAEALNTDWEPYFRVGSQEWLYKLEFGWWNKYCDTVLGAYYYANLPNGALISSFNPSLLIKSDQTLIRLDTFGAVLVFYESLVTEVSNMNDVDKMNYDFAKDRCDREWIKALELMNFYNLYGNSPNGPTTKLEENWTADVDYFNGDRRFF
Ga0208255_10001441	F011761	AGGAG	MAYVLGGSDGENYGFTFAIANFALRAMHESLGLVNMTNVVTPTQGNQFLVPNFAPITYQDFNPAGSNVAPWNTGNATVQNPAMSQTSILASPAVATTAFDIFLGWTTSFQLAATLGAELGDSFAEKVDQRVCQAFANGTASETDGTATPVGQTTGFKPTPGNTFYPQSADGYYRVLRLGALELLPAGGNVLAGTGGFTENTVIGLIRLAKQQFKIARMTGNPVVVLDSNGIVTEATVGAVGGSGSSLTRLLAELTGGSVSGPSSGGSNLSALGNELLQTGKIENVYGVMVMFTTFLQHTTRTIAGTASTPCLVGAYFGESALFTVMKEGLQIKLGEVPGGLQNWLTGVGYFGSGVGDQRRGGAINIVQDA
Ga0208255_10001442	F028717	AGGAG	MDARIQTGGHDNQAAAGAVQQPEADTQVNAGAIRKSTTNSILNALSQASGQNFESVEAALSFMARTSASQQTGGSAQPVEEPQQQRAGRVTTNDLHEQFSKLQSDLARKDQMIRERELDSDIQRAMGDRFDPDLLDYALSKVKSNIQWNSDGTYNIINGKGQERYGIDGNPLTIQGLVQEVAAGNPKLLKQNTLSSGSGLRPGQGNFAGAPQDSIPDYSKDPAAFNAWAQKSGLGKNVGLKIMQVSATSSMPGKTII