Scaffold Ga0208866_1002311

Overview

Basic Information

• Taxon OID: 3300025340
• Scaffold ID: Ga0208866_1002311
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE20Aug07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1188
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F010534	Metagenome / Metatranscriptome	302	N
F042163	Metagenome / Metatranscriptome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208866_10023111	F042163	N/A	MNLTVKVTEQVEKKLEVVLKGKYDNRTIWMYYKISLQMLRDIIEDLIACHHTTHPLAEKDLYYERNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTT
Ga0208866_10023112	F010534	AGAAGG	MSDKVGEKQEAIMNLIDQQIKESLKDQASRLEILQDRIKDAIDISTTEHSQGIKQVMLFVTKAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAVKIALSNRNEETRSRVLRELLEKTTTKIEALSVRVSQAPQP
Ga0208866_10023113	F007918	N/A	DPFLKQELEEIKQELLSILANVESVTEAMNRAILKEEDRREQFRTLCSLIDHSFGENIEMVEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVAIKPDLKNMKIEMEKVLSQQRIEKFQTNPQQEEQRPQKG