NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208502_1000357

Scaffold Ga0208502_1000357


Overview

Basic Information
Taxon OID3300025339 Open in IMG/M
Scaffold IDGa0208502_1000357 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Jul07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4470
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F027396Metagenome194Y
F052345Metagenome142Y
F102399Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208502_100035710F052345AGGMDRRTREYKELVKMTPTTEDLLTEEIDGELYLYKRSPQCKICNTSDDLRGIVDSLLLFPKSYKEVLRAIEPLQEKLNMPKEERINYENIRNHQKNHLPFEKRMVREVVERRAREKNISILDASQRMLTAEAFYEVILAKGWEELAMGYEKPTLTQTMHAMEMLRAIEKEESSDYRPEDLLQQLDMILLAIRDVLPPDMKQALFKKIEDYQGESGARKKRSRSSQAELESGEEYIDADLEEDF
Ga0208502_10003575F102399AGGMTFLERTLASYQRNEIITPYIEEALIHADWPEEYPIRVYNKERKFDNMYHPSTDITKGEMHLYYKFHPELRAFYKEERISPTLQMTFQIGSALHSMMQSMLIHLGFTSEDSVEVRIRDEERMIAGAIDILELTMPNGERFLVDIKTCNKLPLEASHTYSMQLRVYQDVHPDAPERMALLFVEKSYPHRLRAIEVQPDPDELNKLYDKWSRVRVAIRNNDPSELKSCCNGPTTEEFTVCPAKSICERWSENDNTTKG
Ga0208502_10003577F021233AGGAGVSNNFKRGLAPLETAPEPELGSNHDDRFSEMHEFAVRAFTWKTKQEDLSLLDSIEQVVDQFMADYMRPAEVIIARFNTDKSMTVDEQDRLFLNLQSAITAIEEEVTRRYLKAQYAWYMLDDKYWTAWRKPSSGTQKDLEAVAKIETQSDRQFYFVQYAAWRMINDKVQSMKASQRYIQNQLYRRG
Ga0208502_10003578F027396GAGGMEEPAPKPRKSRKQEVIQGQMTWQILERLLNNYMEWQQVYLKTGNPDLHLLNGVTVNIYDLMKGIESLPPRQKQAVVLSCLENRKEVEVARIMGFQKWSSQVGMYKRKALKNLCETVWKNYEES

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