Scaffold Ga0208281_11280

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208281_11280

Scaffold Ga0208281_11280

Overview

Basic Information
Taxon OID	3300025334 Open in IMG/M
Scaffold ID	Ga0208281_11280 Open in IMG/M
Source Dataset Name	Saline lake microbial communities from Deep Lake, Antarctica, in enrichment culture - Antarctic Deep Lake Metagenome VIRDL14 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	515
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Deep Lake, Antarctica
Coordinates	Lat. (^o)	-68.5563	Long. (^o)	78.1877	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102170	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208281_112801	F102170	GGAGG	MSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFAGVLL

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