Scaffold Ga0209342_10629322

Overview

Basic Information

• Taxon OID: 3300025326
• Scaffold ID: Ga0209342_10629322
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 871
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018227	Metagenome / Metatranscriptome	236	Y
F026359	Metagenome / Metatranscriptome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209342_106293222	F018227	GGAGG	MRFSLAVALSALLWCGTAEARTNWVASPGLPCETVCRNPVTVGGRPDAYVCAGRVKGAPYGEVRSGMIGAGSSNCYVPGEQGRMHTDGPFVCLCSPR
Ga0209342_106293223	F026359	GGAGG	MRLEELPKIYRPETLSLMDRALEQAWRELKRRGTIVDANAARERLTTTIVALASVGETDSAKLQRFALKASDNVLRQ