Scaffold Ga0207697

Basic Information
Taxon OID	3300025315 Open in IMG/M
Scaffold ID	Ga0207697_10011021 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025315 Open in IMG/M

Scaffold ID

Ga0207697_10011021 Open in IMG/M

Source Dataset Name

Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3836
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

3836

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Kellogg Biological Station, Michigan, USA

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F008444	Metagenome	333	Y
F010880	Metagenome	298	Y
F014022	Metagenome	266	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0207697_100110213	F014022	N/A	VLDEVKQVGNMAQAAARSAQPYRRHILGLTLQRSLFGQAARAATRIGLPGLTSELDFPARLDENGDLFLDRSQITALTKALPSWFTPETLELMHTTHVAACDALVDASENAARVAASLDSAARKLSEDLANRMALVLAYGILSKFVPDVLLRALADAGDVEPPPFPEKSAGAELMQNTFALYQACCALNYTPQRLQREWPHVAPEVFHLVREFCNRQTGFGPLAWDAPGYEDPNYVVGLLHSAFTEVDAEQVRRRLSFAKRPAVTPFPGGVRTKIAALRRVLGFWLDFLERETWYVRRAFYVGMIPLLQQLAAGYRQKIPRFQLADLLFLDIRELAAGVADPAVIHARRQSYMENTDYLSLHGVDPGRLEAILGSS
Ga0207697_100110214	F010880	N/A	MSYALKKGTASKILLIYALDATDMRLGKTGLSSQTPDSSAAYIREGDAQVRRVPLVNGKLGEHRAGSFVEIESKLLPGVYQFGVPDEMLAAGAETVTLMLKFPNAVIEPIFIHLVAYDPQDADRLGMSALGPEGRRAALRGAFPRLTAKELGSA
Ga0207697_100110215	F008444	AGGA	MPVQHTYTMKAGTKSKLLLVYATSAESTVGKTGLASNLSAASAAYIREGDSSARPVTIVQGRVGEWGSGAFAEVDPELLPGLYQFGAPDEMLAEGSARAVLLIRFPDTVIKPVEINLVAYDPQDAERIGVWSLAGHKRHEFLRQALPRFTEMELALGEQAEKELAAKLNVKKES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207697_10011021

Overview

Ecosystem & Geography

Associated Families

Sequences