Scaffold Ga0207697_10000054

Overview

Basic Information

• Taxon OID: 3300025315
• Scaffold ID: Ga0207697_10000054
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45906
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031906	Metagenome / Metatranscriptome	181	N
F057493	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207697_100000544	F031906	N/A	MSLSLISISLLAVVVGISLSISNVNALTKVGNTDFSIVIPDNWSYGQDILSQPALTPTKFATILVNQSEPLNEKMKDGGAFATFKQDSSYGIKNAPFDVYVKYEIDQQDGMNVISKENTTIDNETAVKISGDGINSFSGIKFVQYLVWHDKKPYDLAFMANVKDFETYLPQFEQIVKTFKFLK
Ga0207697_1000005450	F057493	GAGG	LKDSNRDKAYGCLNCGHRYSEISAQVGTILYCKVCHKCEQIVYVSESGISTAERLEKDELFELLSEGRIKLVDDNNDVKSKN