Scaffold Ga0209431_11009664

Overview

Basic Information

• Taxon OID: 3300025313
• Scaffold ID: Ga0209431_11009664
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 587
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018428	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209431_110096641	F018428	N/A	LVQGEKKVLQVITHLADQFSTQGTALKAQAQQLQHDLAKIMRRFGRQCRGQGKVFVSWVRQTETHLLATGAPVVALARTAQVHVQSATQLTADQRARWDTTLTLALATHQQITTQSRRLTHGKPLTHCKIVNAYDPTIAPICKGKSNCPTQFGRKPGILAEPATGFVFAVHLPVGNPSDVSCVVPLVDKLQTALT