NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209431_10311056

Scaffold Ga0209431_10311056


Overview

Basic Information
Taxon OID3300025313 Open in IMG/M
Scaffold IDGa0209431_10311056 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1231
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012957Metagenome275Y
F013621Metagenome269N

Sequences

Protein IDFamilyRBSSequence
Ga0209431_103110562F012957GGAGGMENPFLQTLNLYRGKSALQISPSLELALVFVSLAPAIPGMENKMPDKNTKKYQWEKKLTASFNFDGALEVAAAAAALAQGREELVSGSDGTLPSWYRDPTKTGRDGSAKTIGFYRPKDQPKTPKVRYYLGITENKKDKQGNKIGISLGYPDLFKIARVMEEAALAILGWRKDIEGRRAANGHDRAARSKPATSGAF
Ga0209431_103110563F013621GGAGMITQEEAKDFIRRYREVVLDTPAGEVHVCGSKDVYEELIGQGKVAFSPNELIHLQKAAENGSLETIVKIKSSIPGAKIKDIIPVEKKEETAQKQS
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