Scaffold Ga0209431_10019054

Overview

Basic Information

• Taxon OID: 3300025313
• Scaffold ID: Ga0209431_10019054
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5273
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017022	Metagenome	243	Y
F032948	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209431_100190542	F032948	AGGAG	MAQLQQQSPGRYVMKDLYLFSCKREILARKLESLPITIPLKPIRPETALRRALSLNLDQKRYAFEESSFEKVNDKPVQIILSREALSNGDIDAGVGKAYVERGRVEVNTLYPEIRNSLENGFRFHMETAITRDLSIVVTKYLAACMGIPVRPKNGEIYFALERYIPEVLELMTVIDSLGQESTIRVSPVVGDEVQKVVERAHDHFRTSVEHLMRLTEEISDETHTKTLNTRLKDARDLLEQAVAYEIGLGMELDEVKRNIQNAKSRIAERLLGKPAVSNHPQEPASATVYLARSTGQLDLIR
Ga0209431_100190548	F017022	N/A	MGNEKEKEALMTTLQHQDCEECRLNIEIIGVNGDLISKQILQGMEKSGEHVAVHLNRKGELLSVMTIKTADVPQALSMDHEFELKYSEYLNDLQTGESLIMMTTEGSDHVGIYKLPPRPL