Scaffold Ga0208181_1071046

Overview

Basic Information

• Taxon OID: 3300025300
• Scaffold ID: Ga0208181_1071046
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 690
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 5.24
  • Depth (m): 2820

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088723	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208181_10710461	F088723	N/A	QNRALQRKWFIDEITDNFRATGPMISNQLLQSAEQVLLGRGVPQEFLRSKYTDGFTPDGWKMVHAEANKMAPVKAEMGVGKWVKRDPEGGEGEFIERYINTGEGDKYLWRKADNVDIDENYIPVKGLPNQSLTDEALNDEWLKVWNEQMELRGLDPSVASSFARYKMTAKEAGALPAQYMEVKALADAAVQRAELMGKATFVAPKQISRQIEDHLSLMSGNEVGEGQLR