Scaffold Ga0208181_1010212

Overview

Basic Information

• Taxon OID: 3300025300
• Scaffold ID: Ga0208181_1010212
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2608
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 5.24
  • Depth (m): 2820

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006447	Metagenome / Metatranscriptome	373	Y
F074035	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208181_10102123	F006447	AGGA	MTLFEKICRMVGDRRIPSPRLPAFKMFRVGFANRHVSTVVVLAIVVSAAAVSVGLYFAIKDVASSTYNWPEPAEYQVTTAGLQTMGKKNKDYPDGTESQTLSIRLGDGARISTLRINATSLGRAGITEAFDIRPASVGVTGAKAFLFVGTMTVTESSFPSFSMSESQVANLTTGMKCDGHTLAATVSPSVPEQVLSSERLSSEYLVDNSVVDRVQVFITGPNGAYVNQLILSGVKAHTGSLNLNRMRIGSLTMGSSNLIGDGSGVDQASCIIQATTEAKNITNSITDTPILVQ
Ga0208181_10102127	F074035	AGG	MTSRGLLTHYVLNRPRDHWREVSCLEIGCVNFANGWKTILPANDIANIEMIRRSNMGFREEREDG