Scaffold Ga0208934_1014747

Overview

Basic Information

• Taxon OID: 3300025293
• Scaffold ID: Ga0208934_1014747
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1663
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 4.36
  • Depth (m): 1304

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000747	Metagenome / Metatranscriptome	908	Y
F017843	Metagenome / Metatranscriptome	238	N
F080156	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208934_10147471	F080156	N/A	MNIDAKFFGILIFLVSQTAAGIWWAASLSSEVERLGGIQGSSIPAIEKAIEGLDVMGFRMDQLSTELE
Ga0208934_10147473	F017843	AGGAG	MKKLLFALLVLPMSLFAADFDSIGVNVSGHNDQGTNFGISDSGSLSLALAGEGYTFTFDQHDNDMAVSAYGVELSRSDSKKVGVGYGAGIGILDGGVHYNWMSSGDHVVGGGTTLTVGGFDLATSADWNLTASNITGKVGTSMDLWGAQASALSKWDIDDFSYDGLELDAGYAIPVAAGIHITPSVGVDFNSDWERGDATASVSIILSFGSNGIPAS
Ga0208934_10147475	F000747	N/A	MFPTEFPIKAVCWDSIEEAIEYHQDILGEYPIGKGWINSTDEPSFAAIMYNPIKPSWTFLSFHKNKEAIIVCAITGGTQWDILSPGSAGEELEL