Scaffold Ga0207673_1000950

Overview

Basic Information

• Taxon OID: 3300025290
• Scaffold ID: Ga0207673_1000950
• Source Dataset Name: Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3120
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002553	Metagenome / Metatranscriptome	549	Y
F003416	Metagenome / Metatranscriptome	488	Y
F029253	Metagenome / Metatranscriptome	189	Y
F063048	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207673_10009503	F003416	N/A	MDPLTFAISQSEESDFSAERRWENEGGNPGQLQPLPCDDRKEDATNAPARGTLKAFRYKVNRTCT
Ga0207673_10009504	F002553	AGG	MHLIQFREIMRDAEVAYAIHPIVRKYLLTVKDTTEALIACGVPRAANVARITSAWI
Ga0207673_10009505	F063048	N/A	MRRAAGCQCSADYERLDMSAAILRERKSVAKGESARALEAPISVDEPVS
Ga0207673_10009507	F029253	AGGA	MKPAAADLCLVLAGVGRISLQSSDKLLDQLRVRIDWAELPEPISSRPSVAASVAIRGIAWGSDRQFAGTRD