Scaffold Ga0207903_1024185

Overview

Basic Information

• Taxon OID: 3300025287
• Scaffold ID: Ga0207903_1024185
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-131 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1151
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 17.4274
  • Long. (^o): -59.8286

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038405	Metagenome / Metatranscriptome	166	Y
F039339	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207903_10241852	F038405	GAGG	MRITGQTLKQLKPLLTKALEDGAEVSFQYHGKQRNGPLTDFGWGPQGPFITIEHKRYALGYEQARTGGYQTEIKSFSLAKMSELRVEQFVTA
Ga0207903_10241853	F039339	AGGA	MLRFEDVAQVASSMRLVLERNVTKQDGITYRYTLYDNNEFVEDFFETLAQAWSYIYYYDEAREYENYRTDVEAVEATID