Scaffold Ga0208315_1070042

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1070042
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 883
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003679	Metagenome / Metatranscriptome	474	Y
F021181	Metagenome / Metatranscriptome	220	Y
F041249	Metagenome	160	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10700421	F003679	GAG	MFRIILKNKFKERKIDLSIVSRVMYHQPFTGSIQLEHITWWKRYWIKPILLEILYPKKGWITLVKVFREGKPSIRVITKLASSGKRELSI
Ga0208315_10700422	F068133	GGAG	MQLAIDVFIDMFKSKEIYIIIGSCIIMWIILEWNDV
Ga0208315_10700423	F041249	GAGG	MNEQELLNMTPKRRLRNSTTTKFGMFGLSLGEDNYNRLDAYCKKHNLYKATLVRALVVEYLDKVEKKE
Ga0208315_10700424	F021181	AGGA	MRALILISLLAGFVLAFLGVIIMFHSGEVWLGLGISLVGFYAVIRATQRDTI