Scaffold Ga0208315_1009978

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1009978
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3380
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010273	Metagenome / Metatranscriptome	306	Y
F076175	Metagenome	118	N
F103402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10099781	F103402	N/A	MEYKWTRLEPLVKNEGDLPNVVVDLVCGLTATDGEYTAYIDTMHKLSAPDPSAFIPFEDLTLEWATGIAESVAKDRGFIDTLDKQVAALKVRPTPKPFRWQQVEE
Ga0208315_10099783	F010273	N/A	MKEKLKSRKLWMALGGLLTVMATEWLKMSPELTENVVSAVVIIVPSYLAGQGLVDCFKAYSERK
Ga0208315_10099784	F076175	N/A	MILEALKGLAALPKLVEAVERIGDKLDDKQALERLGVKRDRNRDAVDRVLESSSGQRGEVDSPSSI