Scaffold Ga0208315_1009722

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1009722
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3438
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C338 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004651	Metagenome / Metatranscriptome	429	Y
F049761	Metagenome	146	Y
F067113	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_100972210	F004651	AGGAGG	MTTSETIENHYGAAHAHLTDDELLAEMENIGAILDGFKATLGRLEQRAYQLMEERGATSIPSETYICEMETSWKYDQASFGPLKEVFNDADLKKCLTPAHTEEVKVADKWTTATVKSLANKYGSDALRIFENARTESRGRLKFARRETK
Ga0208315_100972211	F049761	GGAGG	MTTAIESQYHFTAEVKSKGKQQNRDGWAMVVDWKLPGSRYDLTLYGQDWETIEAHDVGDTVIITIQQGNLKANKDGRYSTDYFWDMVSIEPTWIAGDGERVASD
Ga0208315_10097227	F067113	N/A	MTSRMHRVECLDCGKVAVRLIPIDIPVYCGRCGSAALMWMPTA