Scaffold Ga0208315_1004468

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1004468
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5647
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018017	Metagenome / Metatranscriptome	237	Y
F021554	Metagenome / Metatranscriptome	218	N
F031531	Metagenome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10044681	F031531	AGGA	MLFNPDTNTYTDLKDGQLLAKMEQKEQVSTFEDLYVVELEREKTLVIKKITNEAWSDETKARGTFFIEERNRDKKGITLTKSDCGKIAIMLKEISEK
Ga0208315_100446810	F018017	N/A	LKNDSLNADNTTTKINSLWENQQKIVPIPPLSSLKLHGDNCGGFRACHTCRGTRFVYIRSKWDNRITHKRCPACLGHGSIDTRTLN
Ga0208315_100446817	F021554	N/A	VILGLVLGFGYGFTKLFLNHAKDKNKIIRKERKVETDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELQQAKTLQKYEAPIRIFGKPLLKKAMSLIDNFKV