Scaffold Ga0208048_1022801

Overview

Basic Information

• Taxon OID: 3300025283
• Scaffold ID: Ga0208048_1022801
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1841
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000450	Metagenome / Metatranscriptome	1126	Y
F018349	Metagenome / Metatranscriptome	235	Y
F047643	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_10228012	F000450	AGGA	MGDRANFGFVQPNGNTIVLYGHWAGHGMLGKLADAVIKARPRWSDPAYATRIAISQLVGDQWTSETGWGLHVNEISDNEHKVAIVDWEQQTFSLHEEDSFFNTDNKVRGMSNEPIFVMDLSTFCEKYAVNQLLTV
Ga0208048_10228014	F018349	AGGAG	MSDYTQGWQDGVAYAREIIATNIRKWAETESNQDGDTLDWAADRIEYGTVDYDLD
Ga0208048_10228015	F047643	GGA	MYYKIRASTGAACTAAYWDAEFSGLDPYYIGDNVFEIGTGQIEKVSALISKYKLDILVESDYNSTGYTRR