NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208048_1000390

Scaffold Ga0208048_1000390


Overview

Basic Information
Taxon OID3300025283 Open in IMG/M
Scaffold IDGa0208048_1000390 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23562
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (51.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMalawi: Central Region
CoordinatesLat. (o)-13.5167Long. (o)34.7703Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008077Metagenome / Metatranscriptome339Y
F008238Metagenome / Metatranscriptome336Y
F018140Metagenome / Metatranscriptome236Y
F082700Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0208048_100039023F018140GAGMTEEPKTVSGVFAASLPAALAAGMVAIGALLISMQVQSARIEATIVQMAKSVDELKTDARAQMAELDQRVRALEMRP
Ga0208048_100039035F082700N/AMATMVDEYWGQGGTYLANPKTGKRKLIERTEPAQPSEPTTEDLSDGSADPQAPDSGED
Ga0208048_10003906F008238N/AMSFKLNLSIFKSSKPDSKLDFTGMMNVKVEELDALCRFVMSQTPDQYGSVQVPISGWKKTSQKGLAYVSAVAQPPRDWVDPGDAAASLAKATDGVVSGVTEADLF
Ga0208048_10003907F008077N/AMRFGEWMAVTLTAEQQFEIEKKARALLSSPDAGTMAVALYKQASYQQQLLQQAVNEIARLECKLMGY

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