Scaffold Ga0208048_1000390

Overview

Basic Information

• Taxon OID: 3300025283
• Scaffold ID: Ga0208048_1000390
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23562
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (51.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008077	Metagenome / Metatranscriptome	339	Y
F008238	Metagenome / Metatranscriptome	336	Y
F018140	Metagenome / Metatranscriptome	236	Y
F082700	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_100039023	F018140	GAG	MTEEPKTVSGVFAASLPAALAAGMVAIGALLISMQVQSARIEATIVQMAKSVDELKTDARAQMAELDQRVRALEMRP
Ga0208048_100039035	F082700	N/A	MATMVDEYWGQGGTYLANPKTGKRKLIERTEPAQPSEPTTEDLSDGSADPQAPDSGED
Ga0208048_10003906	F008238	N/A	MSFKLNLSIFKSSKPDSKLDFTGMMNVKVEELDALCRFVMSQTPDQYGSVQVPISGWKKTSQKGLAYVSAVAQPPRDWVDPGDAAASLAKATDGVVSGVTEADLF
Ga0208048_10003907	F008077	N/A	MRFGEWMAVTLTAEQQFEIEKKARALLSSPDAGTMAVALYKQASYQQQLLQQAVNEIARLECKLMGY