NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208030_1042643

Scaffold Ga0208030_1042643


Overview

Basic Information
Taxon OID3300025282 Open in IMG/M
Scaffold IDGa0208030_1042643 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.38Long. (o)4.65Alt. (m)Depth (m)2720
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018449Metagenome / Metatranscriptome235N
F051463Metagenome / Metatranscriptome144N
F103418Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208030_10426431F018449AGGAMNKLLIILLSFLLVGCAAYKPIADLKASKNGNDFQEDRQHCRLLIKEEFNAFYAAWYDRELLSRCLNGRGHNILNTYTIGN
Ga0208030_10426432F051463AGGMDIVSAEEKLRDGLLQEQISQGRIELIRLLQNDKESGKSWVAIPKGSNNRYLKVATLMRVLRDKFNHTLILESKIKHDCEHRVIIEATLSHKNGGFLSSGLAERYKDSKSSNVQKQRAIECCQTAAWGRCIKSLLAVGYDISTADEIDRSTVSDINDIKEIN
Ga0208030_10426433F103418AGGAGMAFNKADVIASAKKYGPKYAGKISMFINKNRTYIDANGEEVIDTSKPSLFGYMTDQNMNMFSISVWKNTDAKKNADGTIMKGKDGKTVYKTTFKGNAESLGIKQDVEDNVVKIKPSEQEKDSLDDILS

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