Scaffold Ga0208030_1029966

Overview

Basic Information

• Taxon OID: 3300025282
• Scaffold ID: Ga0208030_1029966
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1696
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.38
  • Long. (^o): 4.65
  • Depth (m): 2720

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001227	Metagenome	742	Y
F012859	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10299662	F001227	AGGAG	MVRRKARRTRRRKTFSINLLETGAGLAFLDAANAGQAAQSFIKGDINGGLNTLSNAFKTNKNDFIKIGVGTLAAKLVLGSMGGSKVLGSVGPLKLRA
Ga0208030_10299664	F012859	AGGA	MVRNRRGLAPWSLAREAGIESATVDGTIEVPQYVQPVLDTGFVDEKGDWKGAKSNDKDFIALQIDAAIANGGNFLSPSQNADGTWPLDMTGFRDIFIAIKPTNGGAYAIHAVMGPDDLSFANLSPVNPAALLRGNYGRREGGQVMQDLFKDDNETLTADVWNIFSITESLANQKLLQFKFTNSSGGSSDIETAFMRLV