Scaffold Ga0208449_1028578

Overview

Basic Information

• Taxon OID: 3300025280
• Scaffold ID: Ga0208449_1028578
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1663
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004651	Metagenome / Metatranscriptome	429	Y
F049761	Metagenome	146	Y
F067113	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10285781	F049761	GGAGG	MTTAIESQYHFTAEVKSKGKQQNRDGWAMVVDWKLPGSKFDLTLYGQDWDIVQGFEVGETAIITINQGNLKKDKDGKYSTDYFWDMVSIEPTWIAGDGER
Ga0208449_10285782	F004651	AGGAGG	MTTHEQVISGIIDNHYGEAHAHLSDDELLAEMEHIGAVLDGFKATLGHLEQEAYRRIEERGATSIPSETYICEMEIKRGYDQPSFAPLKEIFNEADLAKCLTPAHTEEVKVADKWATATVKSLSDKYGADHPRGNAPKVVQNALTESRGRLKFARRETK
Ga0208449_10285784	F067113	GGAG	MPKATMHRVECLDCGKVAIRLIPEDIPLYCGRCGSAALMWKPTA