Scaffold Ga0208449_1015206

Overview

Basic Information

• Taxon OID: 3300025280
• Scaffold ID: Ga0208449_1015206
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2549
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM21-C338 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.31
  • Depth (m): 2520

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052411	Metagenome	142	N
F067113	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10152061	F052411	GGAGG	MTTAIESQYHFTAEVKSKGKQQNRDGWAMVVDWKLPGSRYDLTLYGQDWETIESHDV
Ga0208449_10152065	F067113	GGAG	MPKATMHRVECLDCGKVAVRLIPIDIPVYCGRCGSAALMWKPTA