Scaffold Ga0208449

Basic Information
Taxon OID	3300025280 Open in IMG/M
Scaffold ID	Ga0208449_1004609 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025280 Open in IMG/M

Scaffold ID

Ga0208449_1004609 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5717
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (64.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

5717

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (64.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	7.31	Alt. (m)	Depth (m)	2520
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

39.48

Long. (^o)

7.31

Alt. (m)

Depth (m)

2520

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F010690	Metagenome / Metatranscriptome	300	Y
F021554	Metagenome / Metatranscriptome	218	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10046091	F010690	N/A	TATTTSGNNFTVNDGMWLEDMYVSVFTAVYTVSQSLTGYGEFSSNDFGNSLPLKVPMQPGCASLGATGTQGILALASYHNTHMPMKTSCKINTSFTNDITQTGTTSFIMGVGYTKQ
Ga0208449_10046092	F002100	GAGG	MSSFKPALIKPTYDVANYGHDITLPLNCLSGSTATLTPSTATFVQVLEDSRVPIDEVDLFIMDSDKMAMVHAGNDTDYDESWEWRPDMSAQAYLVSFNFAVGMKVSSHTSGNFKISDVQVIMKQVGGGEGDFTYLNKIIDPGMTNMAGVGEQVAIINFSTTVSAKVFDKPLTFQIKVNTDNATGTYQTGIIPLFCYLGSAVPKTWTTSSVIMHIHADLAHAFPIFRDQDNMNMLDTGIGL
Ga0208449_10046093	F021554	AGG	MIIEEIPFFVEFVLLGIVLGFGYGFTKLFLNHAKDKNKIIRKERKVETDNKLENELDKYLDNAPAIIHHLESEIANLKEKGSTPEQTQRLESELQQAKTLQKYEAPIRIFGKPLLKKAMSLIDNFKV
Ga0208449_10046094	F002150	AGG	MVAIPASVLAKEIGKRGTEVSGEFLEKKLGYNFVDLVTKLAIFYVIAFLIAKYMEAIIYFQGGLSTIAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTGAGQFNPPGWDRPYDYGTPEHQEAEPYLFPEKEVKFKFWDLVNAIVIFYIGWETYKYYRNGGRDFLTIAIFSLLGLMVGVLSFSKFLGKFSLNRFQEENK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208449_1004609

Overview

Ecosystem & Geography

Associated Families

Sequences