Scaffold Ga0208814_1009534

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1009534
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3535
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001802	Metagenome / Metatranscriptome	632	Y
F014329	Metagenome / Metatranscriptome	264	Y
F038864	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100953411	F014329	N/A	MEQQNIKNMRDYSVTKKSGEWYNAKATDSFGVKHQNYYETEQECINWIYYIWENEKPPLTKDQEMDMLATAIWGCTKLDKKLSLLKGNQDNLD
Ga0208814_10095344	F001802	N/A	MNTIKQLKNNYLQLGNVIYRPYTVCELPANFGCINFNEKEGVSEWFNYKGFTYLYETMAK
Ga0208814_10095346	F038864	N/A	MKINKKLIVSILELYKLDIVNREIKEHDQSLELLIKVNEQIKLVKEWKK