NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1008426

Scaffold Ga0208814_1008426


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1008426 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3817
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F007611Metagenome / Metatranscriptome348Y
F038864Metagenome165Y
F057680Metagenome / Metatranscriptome136Y
F061291Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100842610F007611N/AMSRIKWITVLDYSSGRVFQYRVSINKHAEEYIIFKNHRLKDVEWMEHSDSRLITN
Ga0208814_100842612F038864AGGMKIDKKLIVSVLELYKLEIVKRDISEHDQTLEILIKVNEQIKLIKEWKK
Ga0208814_10084264F057680AGAAGMTRLIDKIKPEVLRALDRHCKPHYPTSHRMIITSLQDITHYRDLTIEQVNNLITFLPSEFKPKGDLDMFYGDNILLGKYIVK
Ga0208814_10084265F061291N/AMKTKEELEQAIVMHEEALESSRHCVIVDTQDLEQAKKELKQLNKPVISGEQLDNITMAIEKAVGNFNFDDADNYALEFGIDYNSKVVAESFEFQNAQELIEAIMESVHSLFVEKQEDND
Ga0208814_10084269F001802GGAMNTIKQLKNNYLQLGNAIYRPYTVCELPANFGCISFNEKEGISEWFNYKGFTYLYEAMAK

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