Scaffold Ga0208814_1004126

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1004126
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5848
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009033	Metagenome / Metatranscriptome	324	Y
F019396	Metagenome	230	Y
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10041262	F009033	N/A	MELYLNNSWKRIGISLSGGADSALLAYLICSNTDAEIHFTNQIRMWKTRPWQGYIADQVIDWFKERMTNDIHVHKNLIPPELEEPTDYFIKDEYGKMKSGNRIILRSHNEYIARQYNLDALYGGVNMNPDIDIPGKIAERDEGHLLPHFVHNGVDICHPFVYTKKDWIIRQYYMNGIKDLLKLTRSCEGEFAGLDYTTYTPGQHVPECGECFWCNERQWGIDNA
Ga0208814_10041264	F019396	GGA	MNLSNWNPYLKLDDYGSTCMAQQTYEPLVSPDEKIFCKNYSFPNNYQYMDTSDRPLYTEDVVDWFFNNEVEYLNKFSGKSYAPEVIDIDFKNRKIYLKWYGNSCNQIINSGQEWPQEQWHQQIKDIILDQYNEGVYKLTMYPHCHYIDNDNNMRSIDWYGCVQVNNPYVEEKYMQGIIHETAQFRLEETGKSIDGVLNIETMFKRSLGEHVLWGDQNMSYIYKEIFNE
Ga0208814_10041267	F070579	N/A	MKFYITGSTRGLGKYLADHFKCTCIDRPIDLNTDIDKVLDLFEEGDCIILNAHASQLKYVKRLKDKCKLVVMGSIASVHPDPNMPEYSKEKLALENYVNSISTYCPVLYLRLTSSSYKSYRLIARSIQFWIDNPDTTFIGYNIND