Scaffold Ga0208814_1002003

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1002003
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9055
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029566	Metagenome	188	N
F052884	Metagenome	142	N
F053555	Metagenome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100200310	F029566	GAG	MSIGDIDMAHSVEELYFKVSVLNTKAIELHRERYKTQGSYDKAKCTFLLADVRTLASEIRYGLVDLDIEFSKSSIDS
Ga0208814_100200314	F053555	N/A	MIAQSPEKQWNNEWQLQANEWMRIAYSAKMSQLLPKYQYHILDRCLRGSSDIISCESTSVHSNTSSLIQWCKLWSDKALHQYYQVREELTEQRLGKPPTHRQICNARDSTNKRWFTCEHEYPLVIPKKGVRDQNWTMQQLSDWMWAYSKVTIILNSENDRLLSWTEDMDIASKRYKNAGIVVCEHPQHVIV
Ga0208814_10020033	F052884	N/A	MNNILCIGATGYLGSYLTDRFKCITTAKRFQWSPDVWNYDLNQQYDFVFMLARTCRKEYPRRDRLTMMDEVGGIVKVLTAHPRSHIVFTSTKCVYGIAHEEERPMTRQQIGDYFERVINGEFINKTIDLPNRDDGIQISFNNALSDHHRIYADTKICDELLIKNCAKQYTIMRIWDIEKGEINE