Scaffold Ga0208814_1001350

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1001350
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11647
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075351	Metagenome	119	Y
F079234	Metagenome	116	N
F083275	Metagenome	113	N
F083276	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100135010	F083275	AGGA	MTRPTPQEAGQTLGNAIKFQLEFMVMMQHSDRNDEAAKAYNRIIALCDQAGQPVRKNEA
Ga0208814_100135014	F083276	GGA	MAHQIDFGTFCGDEIREYYDRHPDLSILTYAGMLGLTGTEVKDILMTDGSDIDREEEKTAQLMFEEADETFGADY
Ga0208814_10013507	F079234	AGGAG	MVIFQKLNDLKDHGEALGYYRFEVNVYLEPRPNYGSEVRFAVEYRATESDSTEYKYFTREKFEDTDLAFEEAREFVLNMPSLDEHRRQDAVRRSEAYEERLLEDAAHEDDPILKQHLLDKAAREASDRKQLLGLFYKQGYHITAQ
Ga0208814_10013508	F075351	GGAG	MYDEDIKIDADANALAQLIISIVQSANKSETDAKIDELQSKIDDLENQIEEFDIHDHSYDVGEIALEHLSSYGGLHETVTEIINEHDFSDAEIPVASGTTFTVTVT