Scaffold Ga0208814_1000855

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000855
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15876
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035480	Metagenome / Metatranscriptome	172	Y
F035977	Metagenome	171	Y
F057667	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100085510	F057667	N/A	MDLIATHWQSIIFALLIAARAIFSLVPSNNPAVKIFGFIDIMVTALVGGDKRRRKNKN
Ga0208814_100085512	F035480	N/A	MSVTISGANQLYKNIDKLAKWSVKDSAALVNIGERVGNVYANYLAANVKDLDKDTSLRGRKIKKGQLRKSSGTWQPDKDRNTVMAGPRTNAIGRRKTRKYQDGFYAHIVEKGDFGPRFGGKHKTQNTGVFSRGMKATKGRSEKLQIILLRQEFAKYTSKL
Ga0208814_100085519	F035977	N/A	MTDKQQQIYDLKLLQYGANKTLTPGVQSLIYTLSCVEAEEFQLQNICDTQGTCYQVTGKSGDVYSRMRPEWQQLKEARMRKQAIIARLEKWAGEGVEEEDELKDFLR