Scaffold Ga0208814

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1000169 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025276 Open in IMG/M

Scaffold ID

Ga0208814_1000169 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47845
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	57 (77.03%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

47845

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

57 (77.03%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042029	Metagenome / Metatranscriptome	159	Y
F065138	Metagenome / Metatranscriptome	128	N
F076520	Metagenome / Metatranscriptome	118	N
F103920	Metagenome / Metatranscriptome	101	Y
F105936	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100016937	F065138	GAG	MEISSVDSKVIDLLSILSSEGVESIPIDALVKELVSMGIDADDQSLFDELQNLPIVNNIKDGVVYFNTASMGASNLNKVDPEKGNKQVKAMAKKQVDKELNK
Ga0208814_100016951	F105936	AGGAG	MSNYGTTYNINQVGDLYTLQDHGSSPGLGKYASAKGTSVNSPVNYRFLKLFRGFDTEFFFFIKNQDRKPIMLHGTTMQVSLIDRNDRSTVVSKKAIITDYDAGSVKVIITSGESSLFSQGFYDLVFSYTTDQGLVVPMFADLNMRPNYTVEVTEDGDALPLTTQINSSFTTSVVGVDTYYYSSAMKATGYYNKPNGLITLAVYGTGYTGNFWVQGSLNDNPGESDWFNIILGSYTEEFYPYTNHTGIDPWTFRTNVKLIRTKHTSPTGTLDKVVIRV
Ga0208814_10001696	F103920	AGGA	MPTIKDSNNVVLFSDPLKIYLFKDDKTVKVSFKVTDYIVTNREFKQEDFEYILENWKIGEGVQGLEMKHDGKVWWYHSAFGPRPECIDANMVCINFSRFSFRISEQEMQRISDNYYHQKSNVMHWD
Ga0208814_10001697	F042029	AGGA	MNTLYLVCSHSCMSQMEIPYLLNNSPMLHGTSQAGEHWASYELDGQEIDHEPGMLGKIRVHDDYWNISESDRQWYNYEVRNAMSITTEQLDGLLHLIEDKSIAVLLHAQNYEDIWKWSRGKTALLIRTEMDEWDGNIVNWASREYNTLMEDDRNANYSADDHSWPGTDVIVDKFISKKAYNNEIDECENDRIIKQSQWLTLDGLQTLWDTVEIESPDKDWIARYYEDYNNHQDINLELAKEITDAYNKRQ
Ga0208814_100016970	F076520	N/A	MGEITVMKSYTEYLTENKKSWKFKVKTIHELTDEQCDRIEKHLGKYDSKGLGAARKTILQSTPRDFPQHRGYEVFTYDFDTNLIASGWELANGIRNMLGLADGTFKIKGENEPDDNIEADGTEVKSILEDPDYDEANKVESKDHYGDEYNTSFIKELLKLKKQKEKGDE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208814_1000169

Overview

Ecosystem & Geography

Associated Families

Sequences