Scaffold Ga0208814_1000091

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000091
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 70932
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (12.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010278	Metagenome / Metatranscriptome	306	Y
F022286	Metagenome / Metatranscriptome	215	Y
F059355	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100009130	F059355	AGG	MKLMTIIEQIVFSTYEGMIRLMYKDDESENIAELLRALPGITAVTNAGSSSEMGSMTFKVKLITQKDKEEAFEAFKENAVSKYPNIIKIEIANETIEEK
Ga0208814_100009147	F010278	N/A	MPYTKSKIKELVLEAMYEGVHDPVKPGILKKRLGKLSCSIVKTAKSGLKDKGTHYAKALQRYLNYHCK
Ga0208814_100009156	F022286	N/A	MKLSRVILGEILYYDPGFEKATDQLRDKGAKYLGSGDYGSAYLLNGRVYKVTTDEIELEHAVVLKGKKSKNFAFIIDVEVMAPKLGIIQMEVLGEYHGEIPEEWIEATEKEALKMGIDPDELDIRPSNVMVNQQNKLKLVDI