Scaffold Ga0208814_1000075

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000075
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77788
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (12.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y
F020206	Metagenome / Metatranscriptome	225	Y
F055007	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100007525	F055007	N/A	MANCAHCNRVFSCGCQKASMGNGVIVCKNCKALAEANVSTPRDLNLELAKQQIQDLRNK
Ga0208814_100007530	F020206	N/A	MGLDIKLANKTYEFSNSSVSKIISSKSVGKDILVRDYANNAAAVTAGLVKGDLYHSTGDLKVVV
Ga0208814_100007539	F006666	N/A	MNPKSHKELKNGIADEVGVHHSVVDEFITFYYSKLRRKLSDIDFPRIQVDGLGTFYLRKNKLEKAIKKNKSILGNLAKRTYVGFAKSQEINKNVTQMESALMQMEKDILNKKLFKEKHNENMD
Ga0208814_100007540	F004866	N/A	MALVNKVDLKMKVDIDKTIQYQIMTYCFFNDILISNSDMKFLTELSKNDNIELTKFCLKMVEDKIFKSPQSARNAITKAERKNLVDKKGNNKKTISLKKVINVQTSGLVLLDYKILGNESQES
Ga0208814_100007542	F005243	N/A	MANAKTNPELSEKDPKLSKEELAARRDEITSFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMFMAQQYAAQKEGGEPSTPEADEFKAAMKNAMNPE