NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1000046

Scaffold Ga0208814_1000046


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000046 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97368
Total Scaffold Genes140 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)97 (69.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051478Metagenome / Metatranscriptome144Y
F101917Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_1000046111F051478GGAGMKEFEKQVKVLEGPWVDVTFPNGEETTNVISRKTITTYIQDGYLCESTTTRDYRDGDYQDSVRNKRITKING
Ga0208814_1000046136F101917AGGAMATQNTFVIEYGLTVGSTEVISSAGKLAATAISLLTSDNLTEGSSNLYYTDSRFNSAFDTRLANATIDGGTI

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