Basic Information | |
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Taxon OID | 3300025276 Open in IMG/M |
Scaffold ID | Ga0208814_1000036 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 114829 |
Total Scaffold Genes | 104 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (10.58%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | South Georgia Island | |||||||
Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002047 | Metagenome / Metatranscriptome | 599 | Y |
F004866 | Metagenome | 420 | Y |
F005243 | Metagenome / Metatranscriptome | 407 | Y |
F006666 | Metagenome / Metatranscriptome | 367 | Y |
F020206 | Metagenome / Metatranscriptome | 225 | Y |
F055007 | Metagenome / Metatranscriptome | 139 | Y |
F063711 | Metagenome / Metatranscriptome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208814_100003610 | F005243 | N/A | MSNSKTNPELQNKDPQKEMSKKEMSERREEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMYMAQQYAAQKGEGVPDPNSKEGKDFQEAMSKAMSNETS |
Ga0208814_100003612 | F004866 | GAG | MAIVSKVELKHQVDLNKSIKYQIVTYCFFNDTLISNSDLKFLTELSKMQGIELTKFCESAVAKGIFKSSQSARNAITKAEKKNLLVKKGHNKKTISLNPDINVQSEGLVLLDYKILGRETKES |
Ga0208814_100003613 | F006666 | N/A | VKPKSHKDFKKGIADEVGVHPTVVDDFISFYYKKVRENLSNLSFPRINVEGIGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAKSEDIHINIVQMEKAMFQLEEDIRNKKKFKNVKNKVV |
Ga0208814_100003624 | F020206 | N/A | MGLDIKLANKTYEFSNSSVSKIISSKSVGKDILVRDYANNAAAKAAGLVKGDLYHSTGDLKVVVE |
Ga0208814_100003629 | F055007 | N/A | MANCAHCNKQFTCGCQKASLGNGVVVCKQCKIKADADLSTSSNLNRELARQQIQDLRNK |
Ga0208814_100003633 | F063711 | AGTAG | MAGMEPGTTREYWENCLAEYELALEEEFNMQPGKGFNDDIIQLLKFEINECLKQLA |
Ga0208814_100003685 | F002047 | N/A | MKQRISLPEAVAKDRDSLVKKGFLELKDGQYIMTAQALVICATLDSYFIKAKKKTDIQLMGKNFVEKINAYREIFPARKLPSGKPARNNVKALGEAFRWFFETYEYTWEDVIKASKMYVNEYRDADYLYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEEDHFKENVV |
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