NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1000036

Scaffold Ga0208814_1000036


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1000036 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114829
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (10.58%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002047Metagenome / Metatranscriptome599Y
F004866Metagenome420Y
F005243Metagenome / Metatranscriptome407Y
F006666Metagenome / Metatranscriptome367Y
F020206Metagenome / Metatranscriptome225Y
F055007Metagenome / Metatranscriptome139Y
F063711Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100003610F005243N/AMSNSKTNPELQNKDPQKEMSKKEMSERREEITTFYKDNIPHLEVQADYETLLAAIEKARAERMQAQMYMAQQYAAQKGEGVPDPNSKEGKDFQEAMSKAMSNETS
Ga0208814_100003612F004866GAGMAIVSKVELKHQVDLNKSIKYQIVTYCFFNDTLISNSDLKFLTELSKMQGIELTKFCESAVAKGIFKSSQSARNAITKAEKKNLLVKKGHNKKTISLNPDINVQSEGLVLLDYKILGRETKES
Ga0208814_100003613F006666N/AVKPKSHKDFKKGIADEVGVHPTVVDDFISFYYKKVRENLSNLSFPRINVEGIGTFYLRKNKLDKAILKNKSLLGNIAKRTYNGFAKSEDIHINIVQMEKAMFQLEEDIRNKKKFKNVKNKVV
Ga0208814_100003624F020206N/AMGLDIKLANKTYEFSNSSVSKIISSKSVGKDILVRDYANNAAAKAAGLVKGDLYHSTGDLKVVVE
Ga0208814_100003629F055007N/AMANCAHCNKQFTCGCQKASLGNGVVVCKQCKIKADADLSTSSNLNRELARQQIQDLRNK
Ga0208814_100003633F063711AGTAGMAGMEPGTTREYWENCLAEYELALEEEFNMQPGKGFNDDIIQLLKFEINECLKQLA
Ga0208814_100003685F002047N/AMKQRISLPEAVAKDRDSLVKKGFLELKDGQYIMTAQALVICATLDSYFIKAKKKTDIQLMGKNFVEKINAYREIFPARKLPSGKPARNNVKALGEAFRWFFETYEYTWEDVIKASKMYVNEYRDADYLYMQTSQYFICKQDKHRVKHSTLADYCDMIVEGVSTEEDHFKENVV

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